Explore systems

Browse curated peptide and protein systems by sequence, PDB ID, modification type, and protonation-state annotation.

Showing 150 of 552

Search supports sequence or PDB ID. Use [PTM] after an amino acid for modified residues, e.g. AR[CBM]A. Use * after a protonated residue for CpHMD, e.g. AH*H*A. Current Type / PTM / CpHMD filters will be kept.

Due to the accuracy limits of implicit solvent models, we only simulated the first chain of the protein corresponding to each PDB ID.

Class
PTM
CpHMD
SystemLengthModificationpH ConditionMethodsStructure
AK*A3
7.0
UnbiasedAdaptiveCpHMD
AK_C7_A structure
View
AD*K*A4
7.0
UnbiasedAdaptiveCpHMD
AD_C7_K_C7_A structure
View
AE*K*A4
7.0
UnbiasedAdaptiveCpHMD
AE_C7_K_C7_A structure
View
AH*K*A4
7.0
UnbiasedAdaptiveCpHMD
AH_C7_K_C7_A structure
View
AK*D*A4
7.0
UnbiasedAdaptiveCpHMD
AK_C7_D_C7_A structure
View
AK*E*A4
7.0
UnbiasedAdaptiveCpHMD
AK_C7_E_C7_A structure
View
AK*H*A4
7.0
UnbiasedAdaptiveCpHMD
AK_C7_H_C7_A structure
View
AK*K*A4
7.0
UnbiasedAdaptiveCpHMD
AK_C7_K_C7_A structure
View
AK*R*A4
7.0
UnbiasedAdaptiveCpHMD
AK_C7_R_C7_A structure
View
AR*K*A4
7.0
UnbiasedAdaptiveCpHMD
AR_C7_K_C7_A structure
View
1AW824
0.0–12.5
UnbiasedCpHMD
1AW8 structure
View
3DBO34
0.0–12.5
UnbiasedCpHMD
3DBO structure
View
4N3Y35
0.0–12.5
UnbiasedCpHMD
4N3Y structure
View
4C2M44
0.0–12.5
UnbiasedCpHMD
4C2M structure
View
1OJH52
0.0–12.5
UnbiasedCpHMD
1OJH structure
View
2P5854
0.0–12.5
UnbiasedCpHMD
2P58 structure
View
3HTK60
0.0–12.5
UnbiasedCpHMD
3HTK structure
View
3DGP62
0.0–12.5
UnbiasedCpHMD
3DGP structure
View
4F9862
0.0–12.5
UnbiasedCpHMD
4F98 structure
View
2OXL62
0.0–12.5
UnbiasedCpHMD
2OXL structure
View
4I1L62
0.0–12.5
UnbiasedCpHMD
4I1L structure
View
3ZDO63
0.0–12.5
UnbiasedCpHMD
3ZDO structure
View
3CP063
0.0–12.5
UnbiasedCpHMD
3CP0 structure
View
3PP563
0.0–12.5
UnbiasedCpHMD
3PP5 structure
View
3S2R64
0.0–12.5
UnbiasedCpHMD
3S2R structure
View
4K1264
0.0–12.5
UnbiasedCpHMD
4K12 structure
View
3DSO66
0.0–12.5
UnbiasedCpHMD
3DSO structure
View
2Y9U67
0.0–12.5
UnbiasedCpHMD
2Y9U structure
View
2ZDJ69
0.0–12.5
UnbiasedCpHMD
2ZDJ structure
View
1KW470
0.0–12.5
UnbiasedCpHMD
1KW4 structure
View
3NY370
0.0–12.5
UnbiasedCpHMD
3NY3 structure
View
2VQC70
0.0–12.5
UnbiasedCpHMD
2VQC structure
View
2GUZ71
0.0–12.5
UnbiasedCpHMD
2GUZ structure
View
2BYK72
0.0–12.5
UnbiasedCpHMD
2BYK structure
View
3HHW73
0.0–12.5
UnbiasedCpHMD
3HHW structure
View
2QBV73
0.0–12.5
UnbiasedCpHMD
2QBV structure
View
4M1X73
0.0–12.5
UnbiasedCpHMD
4M1X structure
View
2XTC74
0.0–12.5
UnbiasedCpHMD
2XTC structure
View
4NTQ76
0.0–12.5
UnbiasedCpHMD
4NTQ structure
View
4IAJ76
0.0–12.5
UnbiasedCpHMD
4IAJ structure
View
3G9M78
0.0–12.5
UnbiasedCpHMD
3G9M structure
View
3R1578
0.0–12.5
UnbiasedCpHMD
3R15 structure
View
3IBW79
0.0–12.5
UnbiasedCpHMD
3IBW structure
View
4A2080
0.0–12.5
UnbiasedCpHMD
4A20 structure
View
3HUG80
0.0–12.5
UnbiasedCpHMD
3HUG structure
View
4J4280
0.0–12.5
UnbiasedCpHMD
4J42 structure
View
3DNJ80
0.0–12.5
UnbiasedCpHMD
3DNJ structure
View
2ZQE80
0.0–12.5
UnbiasedCpHMD
2ZQE structure
View
2OBP81
0.0–12.5
UnbiasedCpHMD
2OBP structure
View
3E8V82
0.0–12.5
UnbiasedCpHMD
3E8V structure
View