Explore systems

Browse curated peptide and protein systems by sequence, PDB ID, modification type, and protonation-state annotation.

Showing 150 of 583

Search supports sequence or PDB ID. Use [PTM] after an amino acid for modified residues, e.g. AR[CBM]A. Use * after a protonated residue for CpHMD, e.g. AH*H*A. Current Type / PTM / CpHMD filters will be kept.

Due to the accuracy limits of implicit solvent models, we only simulated the first chain of the protein corresponding to each PDB ID.

Class
PTM
CpHMD
SystemLengthModificationpH ConditionMethodsStructure
AFA3
UnbiasedAdaptive
AFA structure
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AAFA4
UnbiasedAdaptive
AAFA structure
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ACFA4
UnbiasedAdaptive
ACFA structure
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ADFA4
UnbiasedAdaptive
ADFA structure
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AEFA4
UnbiasedAdaptive
AEFA structure
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AFAA4
UnbiasedAdaptive
AFAA structure
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AFCA4
UnbiasedAdaptive
AFCA structure
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AFDA4
UnbiasedAdaptive
AFDA structure
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AFEA4
UnbiasedAdaptive
AFEA structure
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AFFA4
UnbiasedAdaptive
AFFA structure
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AFGA4
UnbiasedAdaptive
AFGA structure
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AFHA4
UnbiasedAdaptive
AFHA structure
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AFIA4
UnbiasedAdaptive
AFIA structure
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AFKA4
UnbiasedAdaptive
AFKA structure
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AFLA4
UnbiasedAdaptive
AFLA structure
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AFMA4
UnbiasedAdaptive
AFMA structure
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AFNA4
UnbiasedAdaptive
AFNA structure
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AFPA4
UnbiasedAdaptive
AFPA structure
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AFQA4
UnbiasedAdaptive
AFQA structure
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AFRA4
UnbiasedAdaptive
AFRA structure
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AFSA4
UnbiasedAdaptive
AFSA structure
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AFTA4
UnbiasedAdaptive
AFTA structure
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AFVA4
UnbiasedAdaptive
AFVA structure
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AFWA4
UnbiasedAdaptive
AFWA structure
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AFYA4
UnbiasedAdaptive
AFYA structure
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AGFA4
UnbiasedAdaptive
AGFA structure
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AHFA4
UnbiasedAdaptive
AHFA structure
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AIFA4
UnbiasedAdaptive
AIFA structure
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AKFA4
UnbiasedAdaptive
AKFA structure
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ALFA4
UnbiasedAdaptive
ALFA structure
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AMFA4
UnbiasedAdaptive
AMFA structure
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ANFA4
UnbiasedAdaptive
ANFA structure
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APFA4
UnbiasedAdaptive
APFA structure
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AQFA4
UnbiasedAdaptive
AQFA structure
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ARFA4
UnbiasedAdaptive
ARFA structure
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ASFA4
UnbiasedAdaptive
ASFA structure
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ATFA4
UnbiasedAdaptive
ATFA structure
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AVFA4
UnbiasedAdaptive
AVFA structure
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AWFA4
UnbiasedAdaptive
AWFA structure
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AYFA4
UnbiasedAdaptive
AYFA structure
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3DBO34
0.0–12.5
UnbiasedCpHMD
3DBO structure
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4C2M44
0.0–12.5
UnbiasedCpHMD
4C2M structure
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1OJH52
0.0–12.5
UnbiasedCpHMD
1OJH structure
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3HTK60
0.0–12.5
UnbiasedCpHMD
3HTK structure
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3DGP62
0.0–12.5
UnbiasedCpHMD
3DGP structure
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4F9862
0.0–12.5
UnbiasedCpHMD
4F98 structure
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4I1L62
0.0–12.5
UnbiasedCpHMD
4I1L structure
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3ZDO63
0.0–12.5
UnbiasedCpHMD
3ZDO structure
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3CP063
0.0–12.5
UnbiasedCpHMD
3CP0 structure
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3PP563
0.0–12.5
UnbiasedCpHMD
3PP5 structure
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