Explore systems

Browse curated peptide and protein systems by sequence, PDB ID, modification type, and protonation-state annotation.

Showing 150 of 503

Search supports sequence or PDB ID. Use [PTM] after an amino acid for modified residues, e.g. AR[CBM]A. Use * after a protonated residue for CpHMD, e.g. AH*H*A. Current Type / PTM / CpHMD filters will be kept.

Due to the accuracy limits of implicit solvent models, we only simulated the first chain of the protein corresponding to each PDB ID.

Class
PTM
CpHMD
SystemLengthModificationpH ConditionMethodsStructure
AWA3
UnbiasedAdaptive
AWA structure
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AAWA4
UnbiasedAdaptive
AAWA structure
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ACWA4
UnbiasedAdaptive
ACWA structure
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ADWA4
UnbiasedAdaptive
ADWA structure
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AEWA4
UnbiasedAdaptive
AEWA structure
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AFWA4
UnbiasedAdaptive
AFWA structure
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AGWA4
UnbiasedAdaptive
AGWA structure
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AHWA4
UnbiasedAdaptive
AHWA structure
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AIWA4
UnbiasedAdaptive
AIWA structure
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AKWA4
UnbiasedAdaptive
AKWA structure
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ALWA4
UnbiasedAdaptive
ALWA structure
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AMWA4
UnbiasedAdaptive
AMWA structure
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ANWA4
UnbiasedAdaptive
ANWA structure
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APWA4
UnbiasedAdaptive
APWA structure
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AQWA4
UnbiasedAdaptive
AQWA structure
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ARWA4
UnbiasedAdaptive
ARWA structure
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ASWA4
UnbiasedAdaptive
ASWA structure
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ATWA4
UnbiasedAdaptive
ATWA structure
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AVWA4
UnbiasedAdaptive
AVWA structure
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AWAA4
UnbiasedAdaptive
AWAA structure
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AWCA4
UnbiasedAdaptive
AWCA structure
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AWDA4
UnbiasedAdaptive
AWDA structure
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AWEA4
UnbiasedAdaptive
AWEA structure
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AWFA4
UnbiasedAdaptive
AWFA structure
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AWGA4
UnbiasedAdaptive
AWGA structure
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AWHA4
UnbiasedAdaptive
AWHA structure
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AWIA4
UnbiasedAdaptive
AWIA structure
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AWKA4
UnbiasedAdaptive
AWKA structure
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AWLA4
UnbiasedAdaptive
AWLA structure
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AWMA4
UnbiasedAdaptive
AWMA structure
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AWNA4
UnbiasedAdaptive
AWNA structure
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AWPA4
UnbiasedAdaptive
AWPA structure
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AWQA4
UnbiasedAdaptive
AWQA structure
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AWRA4
UnbiasedAdaptive
AWRA structure
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AWSA4
UnbiasedAdaptive
AWSA structure
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AWTA4
UnbiasedAdaptive
AWTA structure
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AWVA4
UnbiasedAdaptive
AWVA structure
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AWWA4
UnbiasedAdaptive
AWWA structure
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AWYA4
UnbiasedAdaptive
AWYA structure
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AYWA4
UnbiasedAdaptive
AYWA structure
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3DBO34
0.0–12.5
UnbiasedCpHMD
3DBO structure
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4N3Y35
0.0–12.5
UnbiasedCpHMD
4N3Y structure
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1OJH52
0.0–12.5
UnbiasedCpHMD
1OJH structure
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2P5854
0.0–12.5
UnbiasedCpHMD
2P58 structure
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3DGP62
0.0–12.5
UnbiasedCpHMD
3DGP structure
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4F9862
0.0–12.5
UnbiasedCpHMD
4F98 structure
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3CP063
0.0–12.5
UnbiasedCpHMD
3CP0 structure
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3PP563
0.0–12.5
UnbiasedCpHMD
3PP5 structure
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3S2R64
0.0–12.5
UnbiasedCpHMD
3S2R structure
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4K1264
0.0–12.5
UnbiasedCpHMD
4K12 structure
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