Explore systems

Browse curated peptide and protein systems by sequence, PDB ID, modification type, and protonation-state annotation.

Showing 451500 of 1015

Search supports sequence or PDB ID. Use [PTM] after an amino acid for modified residues, e.g. AR[CBM]A. Use * after a protonated residue for CpHMD, e.g. AH*H*A. Current Type / PTM / CpHMD filters will be kept.

Due to the accuracy limits of implicit solvent models, we only simulated the first chain of the protein corresponding to each PDB ID.

Class
PTM
CpHMD
SystemLengthModificationpH ConditionMethodsStructure
AYFA4
UnbiasedAdaptive
AYFA structure
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AYGA4
UnbiasedAdaptive
AYGA structure
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AYHA4
UnbiasedAdaptive
AYHA structure
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AYIA4
UnbiasedAdaptive
AYIA structure
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AYKA4
UnbiasedAdaptive
AYKA structure
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AYLA4
UnbiasedAdaptive
AYLA structure
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AYMA4
UnbiasedAdaptive
AYMA structure
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AYNA4
UnbiasedAdaptive
AYNA structure
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AYPA4
UnbiasedAdaptive
AYPA structure
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AYQA4
UnbiasedAdaptive
AYQA structure
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AYRA4
UnbiasedAdaptive
AYRA structure
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AYSA4
UnbiasedAdaptive
AYSA structure
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AYTA4
UnbiasedAdaptive
AYTA structure
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AYVA4
UnbiasedAdaptive
AYVA structure
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AYWA4
UnbiasedAdaptive
AYWA structure
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AYYA4
UnbiasedAdaptive
AYYA structure
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1AW824
0.0–12.5
UnbiasedCpHMD
1AW8 structure
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3DBO34
0.0–12.5
UnbiasedCpHMD
3DBO structure
View
4N3Y35
0.0–12.5
UnbiasedCpHMD
4N3Y structure
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4C2M44
0.0–12.5
UnbiasedCpHMD
4C2M structure
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1OJH52
0.0–12.5
UnbiasedCpHMD
1OJH structure
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2P5854
0.0–12.5
UnbiasedCpHMD
2P58 structure
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3HTK60
0.0–12.5
UnbiasedCpHMD
3HTK structure
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3DGP62
0.0–12.5
UnbiasedCpHMD
3DGP structure
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4F9862
0.0–12.5
UnbiasedCpHMD
4F98 structure
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2OXL62
0.0–12.5
UnbiasedCpHMD
2OXL structure
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4I1L62
0.0–12.5
UnbiasedCpHMD
4I1L structure
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3ZDO63
0.0–12.5
UnbiasedCpHMD
3ZDO structure
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3CP063
0.0–12.5
UnbiasedCpHMD
3CP0 structure
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3PP563
0.0–12.5
UnbiasedCpHMD
3PP5 structure
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3S2R64
0.0–12.5
UnbiasedCpHMD
3S2R structure
View
4K1264
0.0–12.5
UnbiasedCpHMD
4K12 structure
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3DSO66
0.0–12.5
UnbiasedCpHMD
3DSO structure
View
2Y9U67
0.0–12.5
UnbiasedCpHMD
2Y9U structure
View
2ZDJ69
0.0–12.5
UnbiasedCpHMD
2ZDJ structure
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1KW470
0.0–12.5
UnbiasedCpHMD
1KW4 structure
View
3NY370
0.0–12.5
UnbiasedCpHMD
3NY3 structure
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2VQC70
0.0–12.5
UnbiasedCpHMD
2VQC structure
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2GUZ71
0.0–12.5
UnbiasedCpHMD
2GUZ structure
View
2BYK72
0.0–12.5
UnbiasedCpHMD
2BYK structure
View
3HHW73
0.0–12.5
UnbiasedCpHMD
3HHW structure
View
2QBV73
0.0–12.5
UnbiasedCpHMD
2QBV structure
View
4M1X73
0.0–12.5
UnbiasedCpHMD
4M1X structure
View
2XTC74
0.0–12.5
UnbiasedCpHMD
2XTC structure
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1TTZ75
0.0–12.5
UnbiasedCpHMD
1TTZ structure
View
4NTQ76
0.0–12.5
UnbiasedCpHMD
4NTQ structure
View
4IAJ76
0.0–12.5
UnbiasedCpHMD
4IAJ structure
View
3G9M78
0.0–12.5
UnbiasedCpHMD
3G9M structure
View
3R1578
0.0–12.5
UnbiasedCpHMD
3R15 structure
View
3IBW79
0.0–12.5
UnbiasedCpHMD
3IBW structure
View