Explore systems

Browse curated peptide and protein systems by sequence, PDB ID, modification type, and protonation-state annotation.

Showing 51100 of 1015

Search supports sequence or PDB ID. Use [PTM] after an amino acid for modified residues, e.g. AR[CBM]A. Use * after a protonated residue for CpHMD, e.g. AH*H*A. Current Type / PTM / CpHMD filters will be kept.

Due to the accuracy limits of implicit solvent models, we only simulated the first chain of the protein corresponding to each PDB ID.

Class
PTM
CpHMD
SystemLengthModificationpH ConditionMethodsStructure
AALA4
UnbiasedAdaptive
AALA structure
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AAMA4
UnbiasedAdaptive
AAMA structure
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AANA4
UnbiasedAdaptive
AANA structure
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AAPA4
UnbiasedAdaptive
AAPA structure
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AAQA4
UnbiasedAdaptive
AAQA structure
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AARA4
UnbiasedAdaptive
AARA structure
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AASA4
UnbiasedAdaptive
AASA structure
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AATA4
UnbiasedAdaptive
AATA structure
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AAVA4
UnbiasedAdaptive
AAVA structure
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AAWA4
UnbiasedAdaptive
AAWA structure
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AAYA4
UnbiasedAdaptive
AAYA structure
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ACAA4
UnbiasedAdaptive
ACAA structure
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ACCA4
UnbiasedAdaptive
ACCA structure
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ACDA4
UnbiasedAdaptive
ACDA structure
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ACEA4
UnbiasedAdaptive
ACEA structure
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ACFA4
UnbiasedAdaptive
ACFA structure
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ACGA4
UnbiasedAdaptive
ACGA structure
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ACHA4
UnbiasedAdaptive
ACHA structure
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ACIA4
UnbiasedAdaptive
ACIA structure
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ACKA4
UnbiasedAdaptive
ACKA structure
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ACLA4
UnbiasedAdaptive
ACLA structure
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ACMA4
UnbiasedAdaptive
ACMA structure
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ACNA4
UnbiasedAdaptive
ACNA structure
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ACPA4
UnbiasedAdaptive
ACPA structure
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ACQA4
UnbiasedAdaptive
ACQA structure
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ACRA4
UnbiasedAdaptive
ACRA structure
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ACSA4
UnbiasedAdaptive
ACSA structure
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ACTA4
UnbiasedAdaptive
ACTA structure
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ACVA4
UnbiasedAdaptive
ACVA structure
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ACWA4
UnbiasedAdaptive
ACWA structure
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ACYA4
UnbiasedAdaptive
ACYA structure
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ADAA4
UnbiasedAdaptive
ADAA structure
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ADCA4
UnbiasedAdaptive
ADCA structure
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ADDA4
UnbiasedAdaptive
ADDA structure
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AD*D*A4
7.0
UnbiasedAdaptiveCpHMD
AD_C7_D_C7_A structure
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ADEA4
UnbiasedAdaptive
ADEA structure
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AD*E*A4
7.0
UnbiasedAdaptiveCpHMD
AD_C7_E_C7_A structure
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ADFA4
UnbiasedAdaptive
ADFA structure
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ADGA4
UnbiasedAdaptive
ADGA structure
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ADHA4
UnbiasedAdaptive
ADHA structure
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AD*H*A4
7.0
UnbiasedAdaptiveCpHMD
AD_C7_H_C7_A structure
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ADIA4
UnbiasedAdaptive
ADIA structure
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ADKA4
UnbiasedAdaptive
ADKA structure
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AD*K*A4
7.0
UnbiasedAdaptiveCpHMD
AD_C7_K_C7_A structure
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ADLA4
UnbiasedAdaptive
ADLA structure
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ADMA4
UnbiasedAdaptive
ADMA structure
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ADNA4
UnbiasedAdaptive
ADNA structure
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ADPA4
UnbiasedAdaptive
ADPA structure
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ADQA4
UnbiasedAdaptive
ADQA structure
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ADRA4
UnbiasedAdaptive
ADRA structure
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