Explore systems

Browse curated peptide and protein systems by sequence, PDB ID, modification type, and protonation-state annotation.

Showing 150 of 1013

Search supports sequence or PDB ID. Use [PTM] after an amino acid for modified residues, e.g. AR[CBM]A. Use * after a protonated residue for CpHMD, e.g. AH*H*A. Current Type / PTM / CpHMD filters will be kept.

Due to the accuracy limits of implicit solvent models, we only simulated the first chain of the protein corresponding to each PDB ID.

Class
PTM
CpHMD
SystemLengthModificationpH ConditionMethodsStructure
AAA3
UnbiasedAdaptive
AAA structure
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ACA3
UnbiasedAdaptive
ACA structure
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ADA3
UnbiasedAdaptive
ADA structure
View
AD*A3
7.0
UnbiasedAdaptiveCpHMD
AD_C7_A structure
View
AEA3
UnbiasedAdaptive
AEA structure
View
AE*A3
7.0
UnbiasedAdaptiveCpHMD
AE_C7_A structure
View
AFA3
UnbiasedAdaptive
AFA structure
View
AGA3
UnbiasedAdaptive
AGA structure
View
AHA3
UnbiasedAdaptive
AHA structure
View
AH*A3
7.0
UnbiasedAdaptiveCpHMD
AH_C7_A structure
View
AIA3
UnbiasedAdaptive
AIA structure
View
AKA3
UnbiasedAdaptive
AKA structure
View
AK[AC]A3
PTM: AC
UnbiasedAdaptive
AK_AC_A structure
View
AK*A3
7.0
UnbiasedAdaptiveCpHMD
AK_C7_A structure
View
AK[CBM]A3
PTM: CBM
UnbiasedAdaptive
AK_CBM_A structure
View
AK[LAC]A3
PTM: LAC
UnbiasedAdaptive
AK_LAC_A structure
View
AK[N1M]A3
PTM: N1M
UnbiasedAdaptive
AK_N1M_A structure
View
AK[N2M]A3
PTM: N2M
UnbiasedAdaptive
AK_N2M_A structure
View
AK[N3M]A3
PTM: N3M
UnbiasedAdaptive
AK_N3M_A structure
View
AK[N6C]A3
PTM: N6C
UnbiasedAdaptive
AK_N6C_A structure
View
AK[SUC]A3
PTM: SUC
UnbiasedAdaptive
AK_SUC_A structure
View
ALA3
UnbiasedAdaptive
ALA structure
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AMA3
UnbiasedAdaptive
AMA structure
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ANA3
UnbiasedAdaptive
ANA structure
View
APA3
UnbiasedAdaptive
APA structure
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AQA3
UnbiasedAdaptive
AQA structure
View
ARA3
UnbiasedAdaptive
ARA structure
View
AR*A3
7.0
UnbiasedAdaptiveCpHMD
AR_C7_A structure
View
AR[CBM]A3
PTM: CBM
UnbiasedAdaptive
AR_CBM_A structure
View
AR[CIR]A3
PTM: CIR
UnbiasedAdaptive
AR_CIR_A structure
View
ASA3
UnbiasedAdaptive
ASA structure
View
AS[P1]A3
PTM: P1
UnbiasedAdaptive
AS_P1_A structure
View
AS[P2]A3
PTM: P2
UnbiasedAdaptive
AS_P2_A structure
View
ATA3
UnbiasedAdaptive
ATA structure
View
AT[P1]A3
PTM: P1
UnbiasedAdaptive
AT_P1_A structure
View
AT[P2]A3
PTM: P2
UnbiasedAdaptive
AT_P2_A structure
View
AVA3
UnbiasedAdaptive
AVA structure
View
AWA3
UnbiasedAdaptive
AWA structure
View
AYA3
UnbiasedAdaptive
AYA structure
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AY[P1]A3
PTM: P1
UnbiasedAdaptive
AY_P1_A structure
View
AY[P2]A3
PTM: P2
UnbiasedAdaptive
AY_P2_A structure
View
AAAA4
UnbiasedAdaptive
AAAA structure
View
AACA4
UnbiasedAdaptive
AACA structure
View
AADA4
UnbiasedAdaptive
AADA structure
View
AAEA4
UnbiasedAdaptive
AAEA structure
View
AAFA4
UnbiasedAdaptive
AAFA structure
View
AAGA4
UnbiasedAdaptive
AAGA structure
View
AAHA4
UnbiasedAdaptive
AAHA structure
View
AAIA4
UnbiasedAdaptive
AAIA structure
View
AAKA4
UnbiasedAdaptive
AAKA structure
View