Explore systems

Browse curated peptide and protein systems by sequence, PDB ID, modification type, and protonation-state annotation.

Showing 150 of 598

Search supports sequence or PDB ID. Use [PTM] after an amino acid for modified residues, e.g. AR[CBM]A. Use * after a protonated residue for CpHMD, e.g. AH*H*A. Current Type / PTM / CpHMD filters will be kept.

Due to the accuracy limits of implicit solvent models, we only simulated the first chain of the protein corresponding to each PDB ID.

Class
PTM
CpHMD
SystemLengthModificationpH ConditionMethodsStructure
ADA3
UnbiasedAdaptive
ADA structure
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AD*A3
7.0
UnbiasedAdaptiveCpHMD
AD_C7_A structure
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AADA4
UnbiasedAdaptive
AADA structure
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ACDA4
UnbiasedAdaptive
ACDA structure
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ADAA4
UnbiasedAdaptive
ADAA structure
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ADCA4
UnbiasedAdaptive
ADCA structure
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ADDA4
UnbiasedAdaptive
ADDA structure
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AD*D*A4
7.0
UnbiasedAdaptiveCpHMD
AD_C7_D_C7_A structure
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ADEA4
UnbiasedAdaptive
ADEA structure
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AD*E*A4
7.0
UnbiasedAdaptiveCpHMD
AD_C7_E_C7_A structure
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ADFA4
UnbiasedAdaptive
ADFA structure
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ADGA4
UnbiasedAdaptive
ADGA structure
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ADHA4
UnbiasedAdaptive
ADHA structure
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AD*H*A4
7.0
UnbiasedAdaptiveCpHMD
AD_C7_H_C7_A structure
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ADIA4
UnbiasedAdaptive
ADIA structure
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ADKA4
UnbiasedAdaptive
ADKA structure
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AD*K*A4
7.0
UnbiasedAdaptiveCpHMD
AD_C7_K_C7_A structure
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ADLA4
UnbiasedAdaptive
ADLA structure
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ADMA4
UnbiasedAdaptive
ADMA structure
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ADNA4
UnbiasedAdaptive
ADNA structure
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ADPA4
UnbiasedAdaptive
ADPA structure
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ADQA4
UnbiasedAdaptive
ADQA structure
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ADRA4
UnbiasedAdaptive
ADRA structure
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AD*R*A4
7.0
UnbiasedAdaptiveCpHMD
AD_C7_R_C7_A structure
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ADSA4
UnbiasedAdaptive
ADSA structure
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ADTA4
UnbiasedAdaptive
ADTA structure
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ADVA4
UnbiasedAdaptive
ADVA structure
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ADWA4
UnbiasedAdaptive
ADWA structure
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ADYA4
UnbiasedAdaptive
ADYA structure
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AEDA4
UnbiasedAdaptive
AEDA structure
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AE*D*A4
7.0
UnbiasedAdaptiveCpHMD
AE_C7_D_C7_A structure
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AFDA4
UnbiasedAdaptive
AFDA structure
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AGDA4
UnbiasedAdaptive
AGDA structure
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AHDA4
UnbiasedAdaptive
AHDA structure
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AH*D*A4
7.0
UnbiasedAdaptiveCpHMD
AH_C7_D_C7_A structure
View
AIDA4
UnbiasedAdaptive
AIDA structure
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AKDA4
UnbiasedAdaptive
AKDA structure
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AK*D*A4
7.0
UnbiasedAdaptiveCpHMD
AK_C7_D_C7_A structure
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ALDA4
UnbiasedAdaptive
ALDA structure
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AMDA4
UnbiasedAdaptive
AMDA structure
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ANDA4
UnbiasedAdaptive
ANDA structure
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APDA4
UnbiasedAdaptive
APDA structure
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AQDA4
UnbiasedAdaptive
AQDA structure
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ARDA4
UnbiasedAdaptive
ARDA structure
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AR*D*A4
7.0
UnbiasedAdaptiveCpHMD
AR_C7_D_C7_A structure
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ASDA4
UnbiasedAdaptive
ASDA structure
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ATDA4
UnbiasedAdaptive
ATDA structure
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AVDA4
UnbiasedAdaptive
AVDA structure
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AWDA4
UnbiasedAdaptive
AWDA structure
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AYDA4
UnbiasedAdaptive
AYDA structure
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