Explore systems

Browse curated peptide and protein systems by sequence, PDB ID, modification type, and protonation-state annotation.

Showing 150 of 599

Search supports sequence or PDB ID. Use [PTM] after an amino acid for modified residues, e.g. AR[CBM]A. Use * after a protonated residue for CpHMD, e.g. AH*H*A. Current Type / PTM / CpHMD filters will be kept.

Due to the accuracy limits of implicit solvent models, we only simulated the first chain of the protein corresponding to each PDB ID.

Class
PTM
CpHMD
SystemLengthModificationpH ConditionMethodsStructure
AEA3
UnbiasedAdaptive
AEA structure
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AE*A3
7.0
UnbiasedAdaptiveCpHMD
AE_C7_A structure
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AAEA4
UnbiasedAdaptive
AAEA structure
View
ACEA4
UnbiasedAdaptive
ACEA structure
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ADEA4
UnbiasedAdaptive
ADEA structure
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AD*E*A4
7.0
UnbiasedAdaptiveCpHMD
AD_C7_E_C7_A structure
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AEAA4
UnbiasedAdaptive
AEAA structure
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AECA4
UnbiasedAdaptive
AECA structure
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AEDA4
UnbiasedAdaptive
AEDA structure
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AE*D*A4
7.0
UnbiasedAdaptiveCpHMD
AE_C7_D_C7_A structure
View
AEEA4
UnbiasedAdaptive
AEEA structure
View
AE*E*A4
7.0
UnbiasedAdaptiveCpHMD
AE_C7_E_C7_A structure
View
AEFA4
UnbiasedAdaptive
AEFA structure
View
AEGA4
UnbiasedAdaptive
AEGA structure
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AEHA4
UnbiasedAdaptive
AEHA structure
View
AE*H*A4
7.0
UnbiasedAdaptiveCpHMD
AE_C7_H_C7_A structure
View
AEIA4
UnbiasedAdaptive
AEIA structure
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AEKA4
UnbiasedAdaptive
AEKA structure
View
AE*K*A4
7.0
UnbiasedAdaptiveCpHMD
AE_C7_K_C7_A structure
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AELA4
UnbiasedAdaptive
AELA structure
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AEMA4
UnbiasedAdaptive
AEMA structure
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AENA4
UnbiasedAdaptive
AENA structure
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AEPA4
UnbiasedAdaptive
AEPA structure
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AEQA4
UnbiasedAdaptive
AEQA structure
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AERA4
UnbiasedAdaptive
AERA structure
View
AE*R*A4
7.0
UnbiasedAdaptiveCpHMD
AE_C7_R_C7_A structure
View
AESA4
UnbiasedAdaptive
AESA structure
View
AETA4
UnbiasedAdaptive
AETA structure
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AEVA4
UnbiasedAdaptive
AEVA structure
View
AEWA4
UnbiasedAdaptive
AEWA structure
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AEYA4
UnbiasedAdaptive
AEYA structure
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AFEA4
UnbiasedAdaptive
AFEA structure
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AGEA4
UnbiasedAdaptive
AGEA structure
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AHEA4
UnbiasedAdaptive
AHEA structure
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AH*E*A4
7.0
UnbiasedAdaptiveCpHMD
AH_C7_E_C7_A structure
View
AIEA4
UnbiasedAdaptive
AIEA structure
View
AKEA4
UnbiasedAdaptive
AKEA structure
View
AK*E*A4
7.0
UnbiasedAdaptiveCpHMD
AK_C7_E_C7_A structure
View
ALEA4
UnbiasedAdaptive
ALEA structure
View
AMEA4
UnbiasedAdaptive
AMEA structure
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ANEA4
UnbiasedAdaptive
ANEA structure
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APEA4
UnbiasedAdaptive
APEA structure
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AQEA4
UnbiasedAdaptive
AQEA structure
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AREA4
UnbiasedAdaptive
AREA structure
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AR*E*A4
7.0
UnbiasedAdaptiveCpHMD
AR_C7_E_C7_A structure
View
ASEA4
UnbiasedAdaptive
ASEA structure
View
ATEA4
UnbiasedAdaptive
ATEA structure
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AVEA4
UnbiasedAdaptive
AVEA structure
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AWEA4
UnbiasedAdaptive
AWEA structure
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AYEA4
UnbiasedAdaptive
AYEA structure
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