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Browse curated peptide and protein systems by sequence, PDB ID, modification type, and protonation-state annotation.

Showing 150 of 584

Search supports sequence or PDB ID. Use [PTM] after an amino acid for modified residues, e.g. AR[CBM]A. Use * after a protonated residue for CpHMD, e.g. AH*H*A. Current Type / PTM / CpHMD filters will be kept.

Due to the accuracy limits of implicit solvent models, we only simulated the first chain of the protein corresponding to each PDB ID.

Class
PTM
CpHMD
SystemLengthModificationpH ConditionMethodsStructure
AGA3
UnbiasedAdaptive
AGA structure
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AAGA4
UnbiasedAdaptive
AAGA structure
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ACGA4
UnbiasedAdaptive
ACGA structure
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ADGA4
UnbiasedAdaptive
ADGA structure
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AEGA4
UnbiasedAdaptive
AEGA structure
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AFGA4
UnbiasedAdaptive
AFGA structure
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AGAA4
UnbiasedAdaptive
AGAA structure
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AGCA4
UnbiasedAdaptive
AGCA structure
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AGDA4
UnbiasedAdaptive
AGDA structure
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AGEA4
UnbiasedAdaptive
AGEA structure
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AGFA4
UnbiasedAdaptive
AGFA structure
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AGGA4
UnbiasedAdaptive
AGGA structure
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AGHA4
UnbiasedAdaptive
AGHA structure
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AGIA4
UnbiasedAdaptive
AGIA structure
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AGKA4
UnbiasedAdaptive
AGKA structure
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AGLA4
UnbiasedAdaptive
AGLA structure
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AGMA4
UnbiasedAdaptive
AGMA structure
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AGNA4
UnbiasedAdaptive
AGNA structure
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AGPA4
UnbiasedAdaptive
AGPA structure
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AGQA4
UnbiasedAdaptive
AGQA structure
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AGRA4
UnbiasedAdaptive
AGRA structure
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AGSA4
UnbiasedAdaptive
AGSA structure
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AGTA4
UnbiasedAdaptive
AGTA structure
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AGVA4
UnbiasedAdaptive
AGVA structure
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AGWA4
UnbiasedAdaptive
AGWA structure
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AGYA4
UnbiasedAdaptive
AGYA structure
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AHGA4
UnbiasedAdaptive
AHGA structure
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AIGA4
UnbiasedAdaptive
AIGA structure
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AKGA4
UnbiasedAdaptive
AKGA structure
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ALGA4
UnbiasedAdaptive
ALGA structure
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AMGA4
UnbiasedAdaptive
AMGA structure
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ANGA4
UnbiasedAdaptive
ANGA structure
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APGA4
UnbiasedAdaptive
APGA structure
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AQGA4
UnbiasedAdaptive
AQGA structure
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ARGA4
UnbiasedAdaptive
ARGA structure
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ASGA4
UnbiasedAdaptive
ASGA structure
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ATGA4
UnbiasedAdaptive
ATGA structure
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AVGA4
UnbiasedAdaptive
AVGA structure
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AWGA4
UnbiasedAdaptive
AWGA structure
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AYGA4
UnbiasedAdaptive
AYGA structure
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1AW824
0.0–12.5
UnbiasedCpHMD
1AW8 structure
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3DBO34
0.0–12.5
UnbiasedCpHMD
3DBO structure
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4N3Y35
0.0–12.5
UnbiasedCpHMD
4N3Y structure
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4C2M44
0.0–12.5
UnbiasedCpHMD
4C2M structure
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2P5854
0.0–12.5
UnbiasedCpHMD
2P58 structure
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3DGP62
0.0–12.5
UnbiasedCpHMD
3DGP structure
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4F9862
0.0–12.5
UnbiasedCpHMD
4F98 structure
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2OXL62
0.0–12.5
UnbiasedCpHMD
2OXL structure
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4I1L62
0.0–12.5
UnbiasedCpHMD
4I1L structure
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3ZDO63
0.0–12.5
UnbiasedCpHMD
3ZDO structure
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