Explore systems

Browse curated peptide and protein systems by sequence, PDB ID, modification type, and protonation-state annotation.

Showing 150 of 600

Search supports sequence or PDB ID. Use [PTM] after an amino acid for modified residues, e.g. AR[CBM]A. Use * after a protonated residue for CpHMD, e.g. AH*H*A. Current Type / PTM / CpHMD filters will be kept.

Due to the accuracy limits of implicit solvent models, we only simulated the first chain of the protein corresponding to each PDB ID.

Class
PTM
CpHMD
SystemLengthModificationpH ConditionMethodsStructure
AKA3
UnbiasedAdaptive
AKA structure
View
AK[AC]A3
PTM: AC
UnbiasedAdaptive
AK_AC_A structure
View
AK*A3
7.0
UnbiasedAdaptiveCpHMD
AK_C7_A structure
View
AK[CBM]A3
PTM: CBM
UnbiasedAdaptive
AK_CBM_A structure
View
AK[LAC]A3
PTM: LAC
UnbiasedAdaptive
AK_LAC_A structure
View
AK[N1M]A3
PTM: N1M
UnbiasedAdaptive
AK_N1M_A structure
View
AK[N2M]A3
PTM: N2M
UnbiasedAdaptive
AK_N2M_A structure
View
AK[N3M]A3
PTM: N3M
UnbiasedAdaptive
AK_N3M_A structure
View
AK[N6C]A3
PTM: N6C
UnbiasedAdaptive
AK_N6C_A structure
View
AK[SUC]A3
PTM: SUC
UnbiasedAdaptive
AK_SUC_A structure
View
AAKA4
UnbiasedAdaptive
AAKA structure
View
ACKA4
UnbiasedAdaptive
ACKA structure
View
ADKA4
UnbiasedAdaptive
ADKA structure
View
AD*K*A4
7.0
UnbiasedAdaptiveCpHMD
AD_C7_K_C7_A structure
View
AEKA4
UnbiasedAdaptive
AEKA structure
View
AE*K*A4
7.0
UnbiasedAdaptiveCpHMD
AE_C7_K_C7_A structure
View
AFKA4
UnbiasedAdaptive
AFKA structure
View
AGKA4
UnbiasedAdaptive
AGKA structure
View
AHKA4
UnbiasedAdaptive
AHKA structure
View
AH*K*A4
7.0
UnbiasedAdaptiveCpHMD
AH_C7_K_C7_A structure
View
AIKA4
UnbiasedAdaptive
AIKA structure
View
AKAA4
UnbiasedAdaptive
AKAA structure
View
AKCA4
UnbiasedAdaptive
AKCA structure
View
AKDA4
UnbiasedAdaptive
AKDA structure
View
AK*D*A4
7.0
UnbiasedAdaptiveCpHMD
AK_C7_D_C7_A structure
View
AKEA4
UnbiasedAdaptive
AKEA structure
View
AK*E*A4
7.0
UnbiasedAdaptiveCpHMD
AK_C7_E_C7_A structure
View
AKFA4
UnbiasedAdaptive
AKFA structure
View
AKGA4
UnbiasedAdaptive
AKGA structure
View
AKHA4
UnbiasedAdaptive
AKHA structure
View
AK*H*A4
7.0
UnbiasedAdaptiveCpHMD
AK_C7_H_C7_A structure
View
AKIA4
UnbiasedAdaptive
AKIA structure
View
AKKA4
UnbiasedAdaptive
AKKA structure
View
AK*K*A4
7.0
UnbiasedAdaptiveCpHMD
AK_C7_K_C7_A structure
View
AKLA4
UnbiasedAdaptive
AKLA structure
View
AKMA4
UnbiasedAdaptive
AKMA structure
View
AKNA4
UnbiasedAdaptive
AKNA structure
View
AKPA4
UnbiasedAdaptive
AKPA structure
View
AKQA4
UnbiasedAdaptive
AKQA structure
View
AKRA4
UnbiasedAdaptive
AKRA structure
View
AK*R*A4
7.0
UnbiasedAdaptiveCpHMD
AK_C7_R_C7_A structure
View
AKSA4
UnbiasedAdaptive
AKSA structure
View
AKTA4
UnbiasedAdaptive
AKTA structure
View
AKVA4
UnbiasedAdaptive
AKVA structure
View
AKWA4
UnbiasedAdaptive
AKWA structure
View
AKYA4
UnbiasedAdaptive
AKYA structure
View
ALKA4
UnbiasedAdaptive
ALKA structure
View
AMKA4
UnbiasedAdaptive
AMKA structure
View
ANKA4
UnbiasedAdaptive
ANKA structure
View
APKA4
UnbiasedAdaptive
APKA structure
View