Explore systems

Browse curated peptide and protein systems by sequence, PDB ID, modification type, and protonation-state annotation.

Showing 150 of 588

Search supports sequence or PDB ID. Use [PTM] after an amino acid for modified residues, e.g. AR[CBM]A. Use * after a protonated residue for CpHMD, e.g. AH*H*A. Current Type / PTM / CpHMD filters will be kept.

Due to the accuracy limits of implicit solvent models, we only simulated the first chain of the protein corresponding to each PDB ID.

Class
PTM
CpHMD
SystemLengthModificationpH ConditionMethodsStructure
ALA3
UnbiasedAdaptive
ALA structure
View
AALA4
UnbiasedAdaptive
AALA structure
View
ACLA4
UnbiasedAdaptive
ACLA structure
View
ADLA4
UnbiasedAdaptive
ADLA structure
View
AELA4
UnbiasedAdaptive
AELA structure
View
AFLA4
UnbiasedAdaptive
AFLA structure
View
AGLA4
UnbiasedAdaptive
AGLA structure
View
AHLA4
UnbiasedAdaptive
AHLA structure
View
AILA4
UnbiasedAdaptive
AILA structure
View
AKLA4
UnbiasedAdaptive
AKLA structure
View
ALAA4
UnbiasedAdaptive
ALAA structure
View
ALCA4
UnbiasedAdaptive
ALCA structure
View
ALDA4
UnbiasedAdaptive
ALDA structure
View
ALEA4
UnbiasedAdaptive
ALEA structure
View
ALFA4
UnbiasedAdaptive
ALFA structure
View
ALGA4
UnbiasedAdaptive
ALGA structure
View
ALHA4
UnbiasedAdaptive
ALHA structure
View
ALIA4
UnbiasedAdaptive
ALIA structure
View
ALKA4
UnbiasedAdaptive
ALKA structure
View
ALLA4
UnbiasedAdaptive
ALLA structure
View
ALMA4
UnbiasedAdaptive
ALMA structure
View
ALNA4
UnbiasedAdaptive
ALNA structure
View
ALPA4
UnbiasedAdaptive
ALPA structure
View
ALQA4
UnbiasedAdaptive
ALQA structure
View
ALRA4
UnbiasedAdaptive
ALRA structure
View
ALSA4
UnbiasedAdaptive
ALSA structure
View
ALTA4
UnbiasedAdaptive
ALTA structure
View
ALVA4
UnbiasedAdaptive
ALVA structure
View
ALWA4
UnbiasedAdaptive
ALWA structure
View
ALYA4
UnbiasedAdaptive
ALYA structure
View
AMLA4
UnbiasedAdaptive
AMLA structure
View
ANLA4
UnbiasedAdaptive
ANLA structure
View
APLA4
UnbiasedAdaptive
APLA structure
View
AQLA4
UnbiasedAdaptive
AQLA structure
View
ARLA4
UnbiasedAdaptive
ARLA structure
View
ASLA4
UnbiasedAdaptive
ASLA structure
View
ATLA4
UnbiasedAdaptive
ATLA structure
View
AVLA4
UnbiasedAdaptive
AVLA structure
View
AWLA4
UnbiasedAdaptive
AWLA structure
View
AYLA4
UnbiasedAdaptive
AYLA structure
View
1AW824
0.0–12.5
UnbiasedCpHMD
1AW8 structure
View
3DBO34
0.0–12.5
UnbiasedCpHMD
3DBO structure
View
4N3Y35
0.0–12.5
UnbiasedCpHMD
4N3Y structure
View
4C2M44
0.0–12.5
UnbiasedCpHMD
4C2M structure
View
1OJH52
0.0–12.5
UnbiasedCpHMD
1OJH structure
View
2P5854
0.0–12.5
UnbiasedCpHMD
2P58 structure
View
3HTK60
0.0–12.5
UnbiasedCpHMD
3HTK structure
View
3DGP62
0.0–12.5
UnbiasedCpHMD
3DGP structure
View
4F9862
0.0–12.5
UnbiasedCpHMD
4F98 structure
View
2OXL62
0.0–12.5
UnbiasedCpHMD
2OXL structure
View