Explore systems

Browse curated peptide and protein systems by sequence, PDB ID, modification type, and protonation-state annotation.

Showing 150 of 563

Search supports sequence or PDB ID. Use [PTM] after an amino acid for modified residues, e.g. AR[CBM]A. Use * after a protonated residue for CpHMD, e.g. AH*H*A. Current Type / PTM / CpHMD filters will be kept.

Due to the accuracy limits of implicit solvent models, we only simulated the first chain of the protein corresponding to each PDB ID.

Class
PTM
CpHMD
SystemLengthModificationpH ConditionMethodsStructure
AMA3
UnbiasedAdaptive
AMA structure
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AAMA4
UnbiasedAdaptive
AAMA structure
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ACMA4
UnbiasedAdaptive
ACMA structure
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ADMA4
UnbiasedAdaptive
ADMA structure
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AEMA4
UnbiasedAdaptive
AEMA structure
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AFMA4
UnbiasedAdaptive
AFMA structure
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AGMA4
UnbiasedAdaptive
AGMA structure
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AHMA4
UnbiasedAdaptive
AHMA structure
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AIMA4
UnbiasedAdaptive
AIMA structure
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AKMA4
UnbiasedAdaptive
AKMA structure
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ALMA4
UnbiasedAdaptive
ALMA structure
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AMAA4
UnbiasedAdaptive
AMAA structure
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AMCA4
UnbiasedAdaptive
AMCA structure
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AMDA4
UnbiasedAdaptive
AMDA structure
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AMEA4
UnbiasedAdaptive
AMEA structure
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AMFA4
UnbiasedAdaptive
AMFA structure
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AMGA4
UnbiasedAdaptive
AMGA structure
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AMHA4
UnbiasedAdaptive
AMHA structure
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AMIA4
UnbiasedAdaptive
AMIA structure
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AMKA4
UnbiasedAdaptive
AMKA structure
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AMLA4
UnbiasedAdaptive
AMLA structure
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AMMA4
UnbiasedAdaptive
AMMA structure
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AMNA4
UnbiasedAdaptive
AMNA structure
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AMPA4
UnbiasedAdaptive
AMPA structure
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AMQA4
UnbiasedAdaptive
AMQA structure
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AMRA4
UnbiasedAdaptive
AMRA structure
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AMSA4
UnbiasedAdaptive
AMSA structure
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AMTA4
UnbiasedAdaptive
AMTA structure
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AMVA4
UnbiasedAdaptive
AMVA structure
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AMWA4
UnbiasedAdaptive
AMWA structure
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AMYA4
UnbiasedAdaptive
AMYA structure
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ANMA4
UnbiasedAdaptive
ANMA structure
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APMA4
UnbiasedAdaptive
APMA structure
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AQMA4
UnbiasedAdaptive
AQMA structure
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ARMA4
UnbiasedAdaptive
ARMA structure
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ASMA4
UnbiasedAdaptive
ASMA structure
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ATMA4
UnbiasedAdaptive
ATMA structure
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AVMA4
UnbiasedAdaptive
AVMA structure
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AWMA4
UnbiasedAdaptive
AWMA structure
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AYMA4
UnbiasedAdaptive
AYMA structure
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1AW824
0.0–12.5
UnbiasedCpHMD
1AW8 structure
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4N3Y35
0.0–12.5
UnbiasedCpHMD
4N3Y structure
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1OJH52
0.0–12.5
UnbiasedCpHMD
1OJH structure
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2P5854
0.0–12.5
UnbiasedCpHMD
2P58 structure
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4F9862
0.0–12.5
UnbiasedCpHMD
4F98 structure
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2OXL62
0.0–12.5
UnbiasedCpHMD
2OXL structure
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4I1L62
0.0–12.5
UnbiasedCpHMD
4I1L structure
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3ZDO63
0.0–12.5
UnbiasedCpHMD
3ZDO structure
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3CP063
0.0–12.5
UnbiasedCpHMD
3CP0 structure
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3PP563
0.0–12.5
UnbiasedCpHMD
3PP5 structure
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