Explore systems

Browse curated peptide and protein systems by sequence, PDB ID, modification type, and protonation-state annotation.

Showing 150 of 574

Search supports sequence or PDB ID. Use [PTM] after an amino acid for modified residues, e.g. AR[CBM]A. Use * after a protonated residue for CpHMD, e.g. AH*H*A. Current Type / PTM / CpHMD filters will be kept.

Due to the accuracy limits of implicit solvent models, we only simulated the first chain of the protein corresponding to each PDB ID.

Class
PTM
CpHMD
SystemLengthModificationpH ConditionMethodsStructure
APA3
UnbiasedAdaptive
APA structure
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AAPA4
UnbiasedAdaptive
AAPA structure
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ACPA4
UnbiasedAdaptive
ACPA structure
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ADPA4
UnbiasedAdaptive
ADPA structure
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AEPA4
UnbiasedAdaptive
AEPA structure
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AFPA4
UnbiasedAdaptive
AFPA structure
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AGPA4
UnbiasedAdaptive
AGPA structure
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AHPA4
UnbiasedAdaptive
AHPA structure
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AIPA4
UnbiasedAdaptive
AIPA structure
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AKPA4
UnbiasedAdaptive
AKPA structure
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ALPA4
UnbiasedAdaptive
ALPA structure
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AMPA4
UnbiasedAdaptive
AMPA structure
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ANPA4
UnbiasedAdaptive
ANPA structure
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APAA4
UnbiasedAdaptive
APAA structure
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APCA4
UnbiasedAdaptive
APCA structure
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APDA4
UnbiasedAdaptive
APDA structure
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APEA4
UnbiasedAdaptive
APEA structure
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APFA4
UnbiasedAdaptive
APFA structure
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APGA4
UnbiasedAdaptive
APGA structure
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APHA4
UnbiasedAdaptive
APHA structure
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APIA4
UnbiasedAdaptive
APIA structure
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APKA4
UnbiasedAdaptive
APKA structure
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APLA4
UnbiasedAdaptive
APLA structure
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APMA4
UnbiasedAdaptive
APMA structure
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APNA4
UnbiasedAdaptive
APNA structure
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APPA4
UnbiasedAdaptive
APPA structure
View
APQA4
UnbiasedAdaptive
APQA structure
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APRA4
UnbiasedAdaptive
APRA structure
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APSA4
UnbiasedAdaptive
APSA structure
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APTA4
UnbiasedAdaptive
APTA structure
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APVA4
UnbiasedAdaptive
APVA structure
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APWA4
UnbiasedAdaptive
APWA structure
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APYA4
UnbiasedAdaptive
APYA structure
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AQPA4
UnbiasedAdaptive
AQPA structure
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ARPA4
UnbiasedAdaptive
ARPA structure
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ASPA4
UnbiasedAdaptive
ASPA structure
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ATPA4
UnbiasedAdaptive
ATPA structure
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AVPA4
UnbiasedAdaptive
AVPA structure
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AWPA4
UnbiasedAdaptive
AWPA structure
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AYPA4
UnbiasedAdaptive
AYPA structure
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3DBO34
0.0–12.5
UnbiasedCpHMD
3DBO structure
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3HTK60
0.0–12.5
UnbiasedCpHMD
3HTK structure
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4F9862
0.0–12.5
UnbiasedCpHMD
4F98 structure
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4I1L62
0.0–12.5
UnbiasedCpHMD
4I1L structure
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3CP063
0.0–12.5
UnbiasedCpHMD
3CP0 structure
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3S2R64
0.0–12.5
UnbiasedCpHMD
3S2R structure
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4K1264
0.0–12.5
UnbiasedCpHMD
4K12 structure
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3DSO66
0.0–12.5
UnbiasedCpHMD
3DSO structure
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2Y9U67
0.0–12.5
UnbiasedCpHMD
2Y9U structure
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2ZDJ69
0.0–12.5
UnbiasedCpHMD
2ZDJ structure
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