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Browse curated peptide and protein systems by sequence, PDB ID, modification type, and protonation-state annotation.

Showing 150 of 580

Search supports sequence or PDB ID. Use [PTM] after an amino acid for modified residues, e.g. AR[CBM]A. Use * after a protonated residue for CpHMD, e.g. AH*H*A. Current Type / PTM / CpHMD filters will be kept.

Due to the accuracy limits of implicit solvent models, we only simulated the first chain of the protein corresponding to each PDB ID.

Class
PTM
CpHMD
SystemLengthModificationpH ConditionMethodsStructure
AQA3
UnbiasedAdaptive
AQA structure
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AAQA4
UnbiasedAdaptive
AAQA structure
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ACQA4
UnbiasedAdaptive
ACQA structure
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ADQA4
UnbiasedAdaptive
ADQA structure
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AEQA4
UnbiasedAdaptive
AEQA structure
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AFQA4
UnbiasedAdaptive
AFQA structure
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AGQA4
UnbiasedAdaptive
AGQA structure
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AHQA4
UnbiasedAdaptive
AHQA structure
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AIQA4
UnbiasedAdaptive
AIQA structure
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AKQA4
UnbiasedAdaptive
AKQA structure
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ALQA4
UnbiasedAdaptive
ALQA structure
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AMQA4
UnbiasedAdaptive
AMQA structure
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ANQA4
UnbiasedAdaptive
ANQA structure
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APQA4
UnbiasedAdaptive
APQA structure
View
AQAA4
UnbiasedAdaptive
AQAA structure
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AQCA4
UnbiasedAdaptive
AQCA structure
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AQDA4
UnbiasedAdaptive
AQDA structure
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AQEA4
UnbiasedAdaptive
AQEA structure
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AQFA4
UnbiasedAdaptive
AQFA structure
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AQGA4
UnbiasedAdaptive
AQGA structure
View
AQHA4
UnbiasedAdaptive
AQHA structure
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AQIA4
UnbiasedAdaptive
AQIA structure
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AQKA4
UnbiasedAdaptive
AQKA structure
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AQLA4
UnbiasedAdaptive
AQLA structure
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AQMA4
UnbiasedAdaptive
AQMA structure
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AQNA4
UnbiasedAdaptive
AQNA structure
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AQPA4
UnbiasedAdaptive
AQPA structure
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AQQA4
UnbiasedAdaptive
AQQA structure
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AQRA4
UnbiasedAdaptive
AQRA structure
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AQSA4
UnbiasedAdaptive
AQSA structure
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AQTA4
UnbiasedAdaptive
AQTA structure
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AQVA4
UnbiasedAdaptive
AQVA structure
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AQWA4
UnbiasedAdaptive
AQWA structure
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AQYA4
UnbiasedAdaptive
AQYA structure
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ARQA4
UnbiasedAdaptive
ARQA structure
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ASQA4
UnbiasedAdaptive
ASQA structure
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ATQA4
UnbiasedAdaptive
ATQA structure
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AVQA4
UnbiasedAdaptive
AVQA structure
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AWQA4
UnbiasedAdaptive
AWQA structure
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AYQA4
UnbiasedAdaptive
AYQA structure
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1AW824
0.0–12.5
UnbiasedCpHMD
1AW8 structure
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3DBO34
0.0–12.5
UnbiasedCpHMD
3DBO structure
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4N3Y35
0.0–12.5
UnbiasedCpHMD
4N3Y structure
View
4C2M44
0.0–12.5
UnbiasedCpHMD
4C2M structure
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1OJH52
0.0–12.5
UnbiasedCpHMD
1OJH structure
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2P5854
0.0–12.5
UnbiasedCpHMD
2P58 structure
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3HTK60
0.0–12.5
UnbiasedCpHMD
3HTK structure
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3DGP62
0.0–12.5
UnbiasedCpHMD
3DGP structure
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4F9862
0.0–12.5
UnbiasedCpHMD
4F98 structure
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2OXL62
0.0–12.5
UnbiasedCpHMD
2OXL structure
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