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Browse curated peptide and protein systems by sequence, PDB ID, modification type, and protonation-state annotation.

Showing 150 of 596

Search supports sequence or PDB ID. Use [PTM] after an amino acid for modified residues, e.g. AR[CBM]A. Use * after a protonated residue for CpHMD, e.g. AH*H*A. Current Type / PTM / CpHMD filters will be kept.

Due to the accuracy limits of implicit solvent models, we only simulated the first chain of the protein corresponding to each PDB ID.

Class
PTM
CpHMD
SystemLengthModificationpH ConditionMethodsStructure
ARA3
UnbiasedAdaptive
ARA structure
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AR*A3
7.0
UnbiasedAdaptiveCpHMD
AR_C7_A structure
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AR[CBM]A3
PTM: CBM
UnbiasedAdaptive
AR_CBM_A structure
View
AR[CIR]A3
PTM: CIR
UnbiasedAdaptive
AR_CIR_A structure
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AARA4
UnbiasedAdaptive
AARA structure
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ACRA4
UnbiasedAdaptive
ACRA structure
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ADRA4
UnbiasedAdaptive
ADRA structure
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AD*R*A4
7.0
UnbiasedAdaptiveCpHMD
AD_C7_R_C7_A structure
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AERA4
UnbiasedAdaptive
AERA structure
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AE*R*A4
7.0
UnbiasedAdaptiveCpHMD
AE_C7_R_C7_A structure
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AFRA4
UnbiasedAdaptive
AFRA structure
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AGRA4
UnbiasedAdaptive
AGRA structure
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AHRA4
UnbiasedAdaptive
AHRA structure
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AH*R*A4
7.0
UnbiasedAdaptiveCpHMD
AH_C7_R_C7_A structure
View
AIRA4
UnbiasedAdaptive
AIRA structure
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AKRA4
UnbiasedAdaptive
AKRA structure
View
AK*R*A4
7.0
UnbiasedAdaptiveCpHMD
AK_C7_R_C7_A structure
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ALRA4
UnbiasedAdaptive
ALRA structure
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AMRA4
UnbiasedAdaptive
AMRA structure
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ANRA4
UnbiasedAdaptive
ANRA structure
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APRA4
UnbiasedAdaptive
APRA structure
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AQRA4
UnbiasedAdaptive
AQRA structure
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ARAA4
UnbiasedAdaptive
ARAA structure
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ARCA4
UnbiasedAdaptive
ARCA structure
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ARDA4
UnbiasedAdaptive
ARDA structure
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AR*D*A4
7.0
UnbiasedAdaptiveCpHMD
AR_C7_D_C7_A structure
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AREA4
UnbiasedAdaptive
AREA structure
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AR*E*A4
7.0
UnbiasedAdaptiveCpHMD
AR_C7_E_C7_A structure
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ARFA4
UnbiasedAdaptive
ARFA structure
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ARGA4
UnbiasedAdaptive
ARGA structure
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ARHA4
UnbiasedAdaptive
ARHA structure
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AR*H*A4
7.0
UnbiasedAdaptiveCpHMD
AR_C7_H_C7_A structure
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ARIA4
UnbiasedAdaptive
ARIA structure
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ARKA4
UnbiasedAdaptive
ARKA structure
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AR*K*A4
7.0
UnbiasedAdaptiveCpHMD
AR_C7_K_C7_A structure
View
ARLA4
UnbiasedAdaptive
ARLA structure
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ARMA4
UnbiasedAdaptive
ARMA structure
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ARNA4
UnbiasedAdaptive
ARNA structure
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ARPA4
UnbiasedAdaptive
ARPA structure
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ARQA4
UnbiasedAdaptive
ARQA structure
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ARRA4
UnbiasedAdaptive
ARRA structure
View
AR*R*A4
7.0
UnbiasedAdaptiveCpHMD
AR_C7_R_C7_A structure
View
ARSA4
UnbiasedAdaptive
ARSA structure
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ARTA4
UnbiasedAdaptive
ARTA structure
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ARVA4
UnbiasedAdaptive
ARVA structure
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ARWA4
UnbiasedAdaptive
ARWA structure
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ARYA4
UnbiasedAdaptive
ARYA structure
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ASRA4
UnbiasedAdaptive
ASRA structure
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ATRA4
UnbiasedAdaptive
ATRA structure
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AVRA4
UnbiasedAdaptive
AVRA structure
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