Explore systems

Browse curated peptide and protein systems by sequence, PDB ID, modification type, and protonation-state annotation.

Showing 150 of 589

Search supports sequence or PDB ID. Use [PTM] after an amino acid for modified residues, e.g. AR[CBM]A. Use * after a protonated residue for CpHMD, e.g. AH*H*A. Current Type / PTM / CpHMD filters will be kept.

Due to the accuracy limits of implicit solvent models, we only simulated the first chain of the protein corresponding to each PDB ID.

Class
PTM
CpHMD
SystemLengthModificationpH ConditionMethodsStructure
ASA3
UnbiasedAdaptive
ASA structure
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AS[P1]A3
PTM: P1
UnbiasedAdaptive
AS_P1_A structure
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AS[P2]A3
PTM: P2
UnbiasedAdaptive
AS_P2_A structure
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AASA4
UnbiasedAdaptive
AASA structure
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ACSA4
UnbiasedAdaptive
ACSA structure
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ADSA4
UnbiasedAdaptive
ADSA structure
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AESA4
UnbiasedAdaptive
AESA structure
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AFSA4
UnbiasedAdaptive
AFSA structure
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AGSA4
UnbiasedAdaptive
AGSA structure
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AHSA4
UnbiasedAdaptive
AHSA structure
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AISA4
UnbiasedAdaptive
AISA structure
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AKSA4
UnbiasedAdaptive
AKSA structure
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ALSA4
UnbiasedAdaptive
ALSA structure
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AMSA4
UnbiasedAdaptive
AMSA structure
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ANSA4
UnbiasedAdaptive
ANSA structure
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APSA4
UnbiasedAdaptive
APSA structure
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AQSA4
UnbiasedAdaptive
AQSA structure
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ARSA4
UnbiasedAdaptive
ARSA structure
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ASAA4
UnbiasedAdaptive
ASAA structure
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ASCA4
UnbiasedAdaptive
ASCA structure
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ASDA4
UnbiasedAdaptive
ASDA structure
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ASEA4
UnbiasedAdaptive
ASEA structure
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ASFA4
UnbiasedAdaptive
ASFA structure
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ASGA4
UnbiasedAdaptive
ASGA structure
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ASHA4
UnbiasedAdaptive
ASHA structure
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ASIA4
UnbiasedAdaptive
ASIA structure
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ASKA4
UnbiasedAdaptive
ASKA structure
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ASLA4
UnbiasedAdaptive
ASLA structure
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ASMA4
UnbiasedAdaptive
ASMA structure
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ASNA4
UnbiasedAdaptive
ASNA structure
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ASPA4
UnbiasedAdaptive
ASPA structure
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ASQA4
UnbiasedAdaptive
ASQA structure
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ASRA4
UnbiasedAdaptive
ASRA structure
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ASSA4
UnbiasedAdaptive
ASSA structure
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ASTA4
UnbiasedAdaptive
ASTA structure
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ASVA4
UnbiasedAdaptive
ASVA structure
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ASWA4
UnbiasedAdaptive
ASWA structure
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ASYA4
UnbiasedAdaptive
ASYA structure
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ATSA4
UnbiasedAdaptive
ATSA structure
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AVSA4
UnbiasedAdaptive
AVSA structure
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AWSA4
UnbiasedAdaptive
AWSA structure
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AYSA4
UnbiasedAdaptive
AYSA structure
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3DBO34
0.0–12.5
UnbiasedCpHMD
3DBO structure
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4C2M44
0.0–12.5
UnbiasedCpHMD
4C2M structure
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1OJH52
0.0–12.5
UnbiasedCpHMD
1OJH structure
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2P5854
0.0–12.5
UnbiasedCpHMD
2P58 structure
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3HTK60
0.0–12.5
UnbiasedCpHMD
3HTK structure
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3DGP62
0.0–12.5
UnbiasedCpHMD
3DGP structure
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4F9862
0.0–12.5
UnbiasedCpHMD
4F98 structure
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2OXL62
0.0–12.5
UnbiasedCpHMD
2OXL structure
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