Explore systems

Browse curated peptide and protein systems by sequence, PDB ID, modification type, and protonation-state annotation.

Showing 150 of 588

Search supports sequence or PDB ID. Use [PTM] after an amino acid for modified residues, e.g. AR[CBM]A. Use * after a protonated residue for CpHMD, e.g. AH*H*A. Current Type / PTM / CpHMD filters will be kept.

Due to the accuracy limits of implicit solvent models, we only simulated the first chain of the protein corresponding to each PDB ID.

Class
PTM
CpHMD
SystemLengthModificationpH ConditionMethodsStructure
ATA3
UnbiasedAdaptive
ATA structure
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AT[P1]A3
PTM: P1
UnbiasedAdaptive
AT_P1_A structure
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AT[P2]A3
PTM: P2
UnbiasedAdaptive
AT_P2_A structure
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AATA4
UnbiasedAdaptive
AATA structure
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ACTA4
UnbiasedAdaptive
ACTA structure
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ADTA4
UnbiasedAdaptive
ADTA structure
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AETA4
UnbiasedAdaptive
AETA structure
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AFTA4
UnbiasedAdaptive
AFTA structure
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AGTA4
UnbiasedAdaptive
AGTA structure
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AHTA4
UnbiasedAdaptive
AHTA structure
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AITA4
UnbiasedAdaptive
AITA structure
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AKTA4
UnbiasedAdaptive
AKTA structure
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ALTA4
UnbiasedAdaptive
ALTA structure
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AMTA4
UnbiasedAdaptive
AMTA structure
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ANTA4
UnbiasedAdaptive
ANTA structure
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APTA4
UnbiasedAdaptive
APTA structure
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AQTA4
UnbiasedAdaptive
AQTA structure
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ARTA4
UnbiasedAdaptive
ARTA structure
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ASTA4
UnbiasedAdaptive
ASTA structure
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ATAA4
UnbiasedAdaptive
ATAA structure
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ATCA4
UnbiasedAdaptive
ATCA structure
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ATDA4
UnbiasedAdaptive
ATDA structure
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ATEA4
UnbiasedAdaptive
ATEA structure
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ATFA4
UnbiasedAdaptive
ATFA structure
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ATGA4
UnbiasedAdaptive
ATGA structure
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ATHA4
UnbiasedAdaptive
ATHA structure
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ATIA4
UnbiasedAdaptive
ATIA structure
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ATKA4
UnbiasedAdaptive
ATKA structure
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ATLA4
UnbiasedAdaptive
ATLA structure
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ATMA4
UnbiasedAdaptive
ATMA structure
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ATNA4
UnbiasedAdaptive
ATNA structure
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ATPA4
UnbiasedAdaptive
ATPA structure
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ATQA4
UnbiasedAdaptive
ATQA structure
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ATRA4
UnbiasedAdaptive
ATRA structure
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ATSA4
UnbiasedAdaptive
ATSA structure
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ATTA4
UnbiasedAdaptive
ATTA structure
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ATVA4
UnbiasedAdaptive
ATVA structure
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ATWA4
UnbiasedAdaptive
ATWA structure
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ATYA4
UnbiasedAdaptive
ATYA structure
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AVTA4
UnbiasedAdaptive
AVTA structure
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AWTA4
UnbiasedAdaptive
AWTA structure
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AYTA4
UnbiasedAdaptive
AYTA structure
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1AW824
0.0–12.5
UnbiasedCpHMD
1AW8 structure
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3DBO34
0.0–12.5
UnbiasedCpHMD
3DBO structure
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4N3Y35
0.0–12.5
UnbiasedCpHMD
4N3Y structure
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4C2M44
0.0–12.5
UnbiasedCpHMD
4C2M structure
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1OJH52
0.0–12.5
UnbiasedCpHMD
1OJH structure
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2P5854
0.0–12.5
UnbiasedCpHMD
2P58 structure
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3HTK60
0.0–12.5
UnbiasedCpHMD
3HTK structure
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3DGP62
0.0–12.5
UnbiasedCpHMD
3DGP structure
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