Explore systems

Browse curated peptide and protein systems by sequence, PDB ID, modification type, and protonation-state annotation.

Showing 150 of 571

Search supports sequence or PDB ID. Use [PTM] after an amino acid for modified residues, e.g. AR[CBM]A. Use * after a protonated residue for CpHMD, e.g. AH*H*A. Current Type / PTM / CpHMD filters will be kept.

Due to the accuracy limits of implicit solvent models, we only simulated the first chain of the protein corresponding to each PDB ID.

Class
PTM
CpHMD
SystemLengthModificationpH ConditionMethodsStructure
AYA3
UnbiasedAdaptive
AYA structure
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AY[P1]A3
PTM: P1
UnbiasedAdaptive
AY_P1_A structure
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AY[P2]A3
PTM: P2
UnbiasedAdaptive
AY_P2_A structure
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AAYA4
UnbiasedAdaptive
AAYA structure
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ACYA4
UnbiasedAdaptive
ACYA structure
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ADYA4
UnbiasedAdaptive
ADYA structure
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AEYA4
UnbiasedAdaptive
AEYA structure
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AFYA4
UnbiasedAdaptive
AFYA structure
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AGYA4
UnbiasedAdaptive
AGYA structure
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AHYA4
UnbiasedAdaptive
AHYA structure
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AIYA4
UnbiasedAdaptive
AIYA structure
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AKYA4
UnbiasedAdaptive
AKYA structure
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ALYA4
UnbiasedAdaptive
ALYA structure
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AMYA4
UnbiasedAdaptive
AMYA structure
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ANYA4
UnbiasedAdaptive
ANYA structure
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APYA4
UnbiasedAdaptive
APYA structure
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AQYA4
UnbiasedAdaptive
AQYA structure
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ARYA4
UnbiasedAdaptive
ARYA structure
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ASYA4
UnbiasedAdaptive
ASYA structure
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ATYA4
UnbiasedAdaptive
ATYA structure
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AVYA4
UnbiasedAdaptive
AVYA structure
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AWYA4
UnbiasedAdaptive
AWYA structure
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AYAA4
UnbiasedAdaptive
AYAA structure
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AYCA4
UnbiasedAdaptive
AYCA structure
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AYDA4
UnbiasedAdaptive
AYDA structure
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AYEA4
UnbiasedAdaptive
AYEA structure
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AYFA4
UnbiasedAdaptive
AYFA structure
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AYGA4
UnbiasedAdaptive
AYGA structure
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AYHA4
UnbiasedAdaptive
AYHA structure
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AYIA4
UnbiasedAdaptive
AYIA structure
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AYKA4
UnbiasedAdaptive
AYKA structure
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AYLA4
UnbiasedAdaptive
AYLA structure
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AYMA4
UnbiasedAdaptive
AYMA structure
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AYNA4
UnbiasedAdaptive
AYNA structure
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AYPA4
UnbiasedAdaptive
AYPA structure
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AYQA4
UnbiasedAdaptive
AYQA structure
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AYRA4
UnbiasedAdaptive
AYRA structure
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AYSA4
UnbiasedAdaptive
AYSA structure
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AYTA4
UnbiasedAdaptive
AYTA structure
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AYVA4
UnbiasedAdaptive
AYVA structure
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AYWA4
UnbiasedAdaptive
AYWA structure
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AYYA4
UnbiasedAdaptive
AYYA structure
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1AW824
0.0–12.5
UnbiasedCpHMD
1AW8 structure
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4C2M44
0.0–12.5
UnbiasedCpHMD
4C2M structure
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1OJH52
0.0–12.5
UnbiasedCpHMD
1OJH structure
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2P5854
0.0–12.5
UnbiasedCpHMD
2P58 structure
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3HTK60
0.0–12.5
UnbiasedCpHMD
3HTK structure
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3DGP62
0.0–12.5
UnbiasedCpHMD
3DGP structure
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4F9862
0.0–12.5
UnbiasedCpHMD
4F98 structure
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2OXL62
0.0–12.5
UnbiasedCpHMD
2OXL structure
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